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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
100
total RNA-seq
85
RNA microarray
43
ATAC-seq
37
ChIP-seq
6
MeRIP-seq
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
DNase-seq
1
Hi-C
Assay category
100
Transcription
Date released
84
February, 2021
6
February, 2023
6
May, 2021
2
March, 2020
1
November, 2019
1
October, 2019
Available data
96
tsv
94
bam
94
bigWig
4
txt
Organism
100
Homo sapiens
Biosample type
primary cell
64
tissue
34
cell line
2
in vitro differentiated cells
Organ
464
connective tissue
397
adipose tissue
316
pancreas
184
liver
68
heart
62
bone element
59
blood vessel
59
vasculature
54
artery
54
kidney
38
epithelium
19
eye
17
brain
14
embryo
7
limb
5
musculature of body
5
nerve
4
skeleton
1
spinal cord
Project
98
AMP
2
T1D
Genome assembly (visualization)
94
GRCh38
94
hg19
Lab
100
AMP-T2D consortium
Audit category:
34
inconsistent ontology term
assay_title!
pCHi-C
biosample_type!
primary cell
BIOSAMPLE
ASSAY
100 results
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total RNA-seq
tissue
bone tissue
58
pigmented layer of retina
2
acetabular part of hip bone
1
ilium
1
ischium
1
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cell line
EndoC_BH1
33
glomerular visceral epithelial cell
1
in vitro differentiated cells
endothelial cell
1
intermediate endothelial cell
1
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