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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
193
total RNA-seq
141
single cell RNA-seq
85
ChIP-seq
76
snATAC-seq
60
ATAC-seq
47
WGBS
17
pCHi-C
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
193
Transcription
Date released
81
February, 2023
51
May, 2021
45
May, 2020
16
September, 2020
March, 2020
Available data
96
bam
96
bigWig
96
tsv
92
fastq
Organism
193
Homo sapiens
Biosample type
188
primary cell
5
tissue
Organ
58
pancreas
53
epithelium
Project
AMP
101
T1D
92
HPAP
Genome assembly (visualization)
96
GRCh38
96
hg19
Lab
101
Kyle Gaulton, UCSD
92
Klaus Kaestner, Upenn
Audit category:
4
inconsistent ontology term
assay_title!
shRNA RNA-seq
award.project!
AMP
month_released!
March, 2020
target.investigated_as!
control
BIOSAMPLE
ASSAY
193 results
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total RNA-seq
primary cell
monocyte
53
pancreatic alpha cell
42
exocrine cell
39
pancreatic beta cell
11
B cell
2
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tissue
islet of Langerhans
5
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