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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
392
total RNA-seq
215
ChIP-seq
148
ATAC-seq
80
single cell RNA-seq
51
WGBS
snATAC-seq
10
MeRIP-seq
8
DNase-seq
8
Hi-C
2
Capture-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
392
Transcription
Date released
120
July, 2018
89
August, 2017
42
February, 2023
41
May, 2021
26
February, 2021
26
September, 2018
20
November, 2019
16
September, 2020
6
May, 2022
March, 2020
2
July, 2019
2
October, 2018
1
August, 2021
1
February, 2020
Available data
327
bam
323
tsv
321
bigWig
178
fastq
6
txt
Organism
392
Homo sapiens
Biosample type
280
tissue
81
primary cell
31
cell line
Organ
474
connective tissue
398
adipose tissue
392
pancreas
188
liver
129
epithelium
70
heart
62
bone element
60
blood vessel
60
kidney
60
vasculature
56
artery
19
eye
17
brain
14
embryo
7
limb
5
nerve
4
musculature of body
4
skeleton
1
pericardium
1
spinal cord
Project
334
AMP
53
HPAP
5
T1D
Genome assembly (visualization)
321
GRCh38
321
hg19
Lab
326
AMP-T2D consortium
53
Klaus Kaestner, Upenn
12
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
31
inconsistent ontology term
assay_title!
snATAC-seq
month_released!
March, 2020
organ_slims!
spleen
BIOSAMPLE
ASSAY
392 results
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Clear Filters
total RNA-seq
tissue
islet of Langerhans
276
body of pancreas
3
pancreas
1
primary cell
pancreatic alpha cell
52
pancreatic beta cell
21
pancreatic acinar cell
4
pancreatic ductal cell
4
cell line
EndoC_BH1
31
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