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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
269
ChIP-seq
246
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
30
DNase-seq
17
pCHi-C
10
Hi-C
9
RRBS
1
DNAme array
1
FAIRE-seq
1
small RNA-seq
0
whole genome sequencing assay
Assay category
246
Transcription
Date released
76
February, 2023
55
May, 2021
47
May, 2020
26
September, 2018
16
September, 2020
12
July, 2019
5
December, 2019
4
November, 2020
2
October, 2018
2
October, 2019
1
February, 2021
Available data
151
bigWig
149
bam
149
tsv
120
fastq
2
bed bed3+
Organism
246
Homo sapiens
Biosample type
1026
tissue
246
primary cell
136
in vitro differentiated cells
114
cell line
Organ
93
epithelium
81
pancreas
10
connective tissue
6
kidney
5
liver
4
heart
2
artery
2
blood vessel
2
vasculature
1
adipose tissue
musculature of body
1
pericardium
Project
96
T1D
92
HPAP
58
AMP
Genome assembly (visualization)
151
hg19
149
GRCh38
Lab
98
Kyle Gaulton, UCSD
92
Klaus Kaestner, Upenn
56
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
246 results
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total RNA-seq
primary cell
monocyte
54
pancreatic alpha cell
52
exocrine cell
39
pancreatic beta cell
21
hepatocyte
5
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