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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
518
ChIP-seq
277
ATAC-seq
263
single cell RNA-seq
244
total RNA-seq
86
RNA microarray
84
snATAC-seq
54
WGBS
52
pCHi-C
31
Hi-C
20
RRBS
10
MeRIP-seq
5
DNase-seq
5
FAIRE-seq
5
STARR-seq
4
GRO-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
244
Transcription
Date released
89
February, 2023
59
August, 2021
26
May, 2022
23
February, 2020
16
September, 2020
14
October, 2019
9
May, 2021
4
July, 2018
2
March, 2020
2
May, 2020
Available data
98
fastq
59
txt
37
tsv
6
bam
2
bed bed3+
2
bigWig
Organism
244
Homo sapiens
Biosample type
133
tissue
97
primary cell
9
cell line
5
in vitro differentiated cells
Organ
73
pancreas
55
epithelium
49
kidney
30
liver
19
eye
12
brain
connective tissue
4
bone element
4
skeleton
3
blood vessel
3
heart
3
limb
3
vasculature
2
adipose tissue
2
artery
2
musculature of body
1
nerve
1
spinal cord
Project
145
AMP
92
HPAP
7
T1D
Genome assembly (visualization)
797
hg19
GRCh38
Lab
92
Klaus Kaestner, Upenn
54
AMP-T2D consortium
49
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
19
Kyle Gaulton, UCSD
10
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
assembly!
GRCh38
audit.WARNING.category!
inconsistent control run_type
organ_slims!
connective tissue
embryo
BIOSAMPLE
ASSAY
244 results
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Clear Filters
total RNA-seq
tissue
kidney
49
islet of Langerhans
32
liver
20
retina
3
pigmented layer of retina
2
+ See 27 more…
primary cell
pancreatic alpha cell
42
exocrine cell
39
pancreatic beta cell
11
CD8-positive, alpha-beta T cell
2
monocyte
1
+ See 2 more…
cell line
HepG2
9
in vitro differentiated cells
embryonic stem cell
5
See all biosamples
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