Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
501
ChIP-seq
271
ATAC-seq
260
single cell RNA-seq
239
total RNA-seq
87
RNA microarray
83
snATAC-seq
58
WGBS
51
pCHi-C
22
Hi-C
16
RRBS
10
MeRIP-seq
5
DNase-seq
5
FAIRE-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
GRO-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
239
Transcription
Date released
89
February, 2023
59
August, 2021
26
May, 2022
23
February, 2020
16
September, 2020
14
October, 2019
4
July, 2018
4
May, 2021
2
March, 2020
2
May, 2020
Available data
98
fastq
59
txt
37
tsv
6
bam
2
bed bed3+
2
bigWig
Organism
239
Homo sapiens
Biosample type
133
tissue
97
primary cell
9
cell line
in vitro differentiated cells
Organ
73
pancreas
55
epithelium
49
kidney
30
liver
19
eye
12
brain
4
bone element
4
skeleton
3
blood vessel
3
heart
3
limb
3
vasculature
2
adipose tissue
2
artery
2
connective tissue
musculature of body
1
nerve
1
spinal cord
Project
140
AMP
92
HPAP
7
T1D
Genome assembly (visualization)
1148
hg19
GRCh38
Lab
92
Klaus Kaestner, Upenn
54
AMP-T2D consortium
49
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
14
Kyle Gaulton, UCSD
10
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
assembly!
GRCh38
biosample_type!
in vitro differentiated cells
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
239 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
tissue
kidney
49
islet of Langerhans
32
liver
20
retina
3
pigmented layer of retina
2
+ See 27 more…
primary cell
pancreatic alpha cell
42
exocrine cell
39
pancreatic beta cell
11
CD8-positive, alpha-beta T cell
2
monocyte
1
+ See 2 more…
cell line
HepG2
9
See all biosamples
Download