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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
108
total RNA-seq
88
ChIP-seq
85
single cell RNA-seq
56
snATAC-seq
49
ATAC-seq
47
WGBS
16
pCHi-C
6
MeRIP-seq
5
STARR-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
108
Transcription
Date released
76
February, 2023
16
September, 2020
9
August, 2021
7
May, 2021
Available data
92
fastq
9
tsv
2
bed bed3+
2
bigWig
Organism
108
Homo sapiens
Biosample type
94
primary cell
tissue
9
cell line
5
in vitro differentiated cells
Organ
53
epithelium
53
pancreas
9
liver
Project
92
HPAP
16
AMP
Genome assembly (visualization)
98
hg19
GRCh38
Lab
92
Klaus Kaestner, Upenn
9
Bing Ren, UCSD
AMP-T2D consortium
7
Kyle Gaulton, UCSD
assembly!
GRCh38
biosample_type!
tissue
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
108 results
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Clear Filters
total RNA-seq
primary cell
pancreatic alpha cell
42
exocrine cell
39
pancreatic beta cell
11
CD8-positive, alpha-beta T cell
2
cell line
HepG2
9
in vitro differentiated cells
embryonic stem cell
5
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