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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
101
ChIP-seq
85
total RNA-seq
77
ATAC-seq
47
WGBS
11
Hi-C
11
snATAC-seq
10
MeRIP-seq
4
RRBS
3
pCHi-C
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
85
Transcription
Date released
42
February, 2023
16
September, 2020
13
February, 2020
6
May, 2022
4
July, 2018
2
March, 2020
1
August, 2021
1
May, 2021
Available data
59
fastq
14
tsv
6
bam
6
txt
Organism
85
Homo sapiens
Biosample type
53
primary cell
32
tissue
Organ
73
pancreas
55
epithelium
49
kidney
30
liver
19
eye
12
brain
6
connective tissue
4
bone element
4
skeleton
3
blood vessel
3
heart
3
limb
3
vasculature
2
adipose tissue
2
artery
2
musculature of body
1
nerve
1
spinal cord
Project
53
HPAP
25
AMP
7
T1D
Genome assembly (visualization)
GRCh38
329
hg19
Lab
53
Klaus Kaestner, Upenn
19
AMP-T2D consortium
12
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
assembly!
GRCh38
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
85 results
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total RNA-seq
primary cell
pancreatic alpha cell
42
pancreatic beta cell
11
tissue
islet of Langerhans
18
Ammon's horn
1
amygdala
1
anterior cingulate cortex
1
body of pancreas
1
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