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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
DNase-seq
75
ATAC-seq
64
single cell RNA-seq
57
total RNA-seq
36
ChIP-seq
6
snATAC-seq
3
RRBS
3
snDrop-seq
2
RNA microarray
2
STARR-seq
1
FAIRE-seq
1
Hi-C
1
small RNA-seq
Assay category
57
Transcription
Date released
49
August, 2021
5
July, 2019
3
October, 2019
Available data
49
txt
8
bam
8
bigWig
8
tsv
Organism
57
Homo sapiens
Biosample type
50
tissue
6
primary cell
1
cell line
Organ
472
connective tissue
398
adipose tissue
364
pancreas
189
liver
97
epithelium
72
heart
62
bone element
61
blood vessel
61
vasculature
57
kidney
56
artery
19
eye
16
brain
12
embryo
7
limb
6
musculature of body
5
nerve
4
skeleton
1
pericardium
1
spinal cord
Project
57
AMP
Genome assembly (visualization)
8
GRCh38
8
hg19
Lab
49
Katalin Susztak, Upenn
8
AMP-T2D consortium
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
organ_slims!
thymus
organ_slims!!
thymus
BIOSAMPLE
ASSAY
57 results
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total RNA-seq
tissue
kidney
49
metanephros
1
primary cell
epithelial cell of proximal tubule
1
glomerular endothelial cell
1
kidney epithelial cell
1
kidney glomerular epithelial cell
1
kidney tubule cell
1
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cell line
glomerular visceral epithelial cell
1
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