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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
90
ATAC-seq
70
total RNA-seq
67
single cell RNA-seq
41
ChIP-seq
34
snATAC-seq
17
pCHi-C
10
MeRIP-seq
5
Hi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
70
Transcription
Date released
59
August, 2021
May, 2022
6
May, 2021
5
February, 2023
Available data
106
tsv
bigWig
96
bam
49
txt
2
bed bed3+
Organism
70
Homo sapiens
Biosample type
56
tissue
9
cell line
5
in vitro differentiated cells
Organ
49
kidney
9
liver
7
pancreas
Project
HPAP
65
AMP
5
T1D
Lab
AMP-T2D consortium
49
Katalin Susztak, Upenn
11
Kyle Gaulton, UCSD
10
Bing Ren, UCSD
award.project!
HPAP
files.file_type!
bigWig
lab.title!
AMP-T2D consortium
month_released!
May, 2022
BIOSAMPLE
ASSAY
70 results
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total RNA-seq
tissue
kidney
49
islet of Langerhans
6
pancreas
1
cell line
HepG2
9
in vitro differentiated cells
embryonic stem cell
5
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