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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
227
total RNA-seq
194
ChIP-seq
135
single cell RNA-seq
122
ATAC-seq
66
snATAC-seq
47
WGBS
17
pCHi-C
10
MeRIP-seq
5
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
227
Transcription
Date released
81
February, 2023
August, 2021
59
May, 2021
45
May, 2020
26
May, 2022
16
September, 2020
Available data
102
bam
98
bigWig
98
fastq
96
tsv
6
txt
2
bed bed3+
Organism
227
Homo sapiens
Biosample type
190
primary cell
32
tissue
5
in vitro differentiated cells
Organ
65
pancreas
53
epithelium
20
liver
Project
101
T1D
92
HPAP
34
AMP
Genome assembly (visualization)
98
hg19
96
GRCh38
Lab
AMP-T2D consortium
115
Kyle Gaulton, UCSD
92
Klaus Kaestner, Upenn
20
Karen Mohlke, UNC
Audit category:
4
inconsistent ontology term
award.project!
LungMap
lab.title!
AMP-T2D consortium
month_released!
August, 2021
BIOSAMPLE
ASSAY
227 results
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total RNA-seq
primary cell
monocyte
53
pancreatic alpha cell
42
exocrine cell
39
pancreatic beta cell
11
CD8-positive, alpha-beta T cell
4
+ See 23 more…
tissue
liver
20
islet of Langerhans
11
pancreas
1
in vitro differentiated cells
embryonic stem cell
5
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