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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1783ChIP-seq
  • 1330total RNA-seq
  • 471ATAC-seq
  • 228single cell RNA-seq
  • 212DNase-seq
  • 87RNA microarray
  • 40pCHi-C
  • 30Hi-C
  • 28WGBS
  • 21RRBS
  • 18small RNA-seq
  • 10MeRIP-seq
  • 8snATAC-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3snDrop-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1DNAme array
  • 1MPRA
  • 1whole genome sequencing assay
Assay category
  • 1330Transcription
Date released
  • 545February, 2021
  • 145May, 2020
  • 131May, 2021
  • 120July, 2018
  • 89August, 2017
  • 74August, 2021
  • 44July, 2019
  • 30October, 2019
  • 26May, 2022
  • 26September, 2018
  • 25February, 2020
  • 20November, 2019
  • 15February, 2018
  • 12February, 2023
  • 11March, 2020
  • 5December, 2019
  • 5January, 2019
  • 4November, 2020
  • 2October, 2018
  • 1May, 2023
Available data
  • 1217tsv
  • 1184bam
  • 1180bigWig
  • 145fastq
  • 59txt
  • 2bed bed3+
Organism
  • 1330Homo sapiens
Biosample type
  • 1024tissue
  • 136in vitro differentiated cells
  • 111cell line
  • 59primary cell
Organ
  • 474connective tissue
  • 398adipose tissue
  • 335pancreas
  • 189liver
  • 76epithelium
  • 72heart
  • 62bone element
  • 61blood vessel
  • 61vasculature
  • 60kidney
  • 56artery
  • 19eye
  • 17brain
  • 14embryo
  • 7limb
  • 6musculature of body
  • 5nerve
  • 4skeleton
  • 1pericardium
  • 1spinal cord
Project
  • 1330AMP
  • 105T1D
  • 92HPAP
Genome assembly (visualization)
  • 1181hg19
  • 1179GRCh38
Lab
  • 1237AMP-T2D consortium
  • 49Katalin Susztak, Upenn
  • 20Karen Mohlke, UNC
  • 14Kyle Gaulton, UCSD
  • 10Bing Ren, UCSD
Audit category:
  • 124inconsistent ontology term
BIOSAMPLE
ASSAY

1330 results

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Clear Filters
total RNA-seq
tissue
adipose tissue382
islet of Langerhans285
liver167
bone tissue58
kidney49
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)19
induced pluripotent stem cell9
embryonic stem cell7
neural progenitor cell7
cell line
smooth muscle cell of the coronary artery52
EndoC_BH131
HepG214
H1-hESC8
early embryonic cell2
primary cell
pancreatic alpha cell10
pancreatic beta cell10
hepatocyte5
osteoblast5
pancreatic acinar cell4
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