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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
256
total RNA-seq
152
single cell RNA-seq
142
ATAC-seq
106
ChIP-seq
82
snATAC-seq
47
WGBS
17
pCHi-C
8
Hi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
256
Transcription
Date released
81
February, 2023
59
August, 2021
51
May, 2021
45
May, 2020
16
September, 2020
4
March, 2020
Available data
108
tsv
98
bam
98
bigWig
92
fastq
49
txt
Organism
256
Homo sapiens
Biosample type
188
primary cell
57
tissue
11
cell line
Organ
63
pancreas
55
epithelium
49
kidney
9
liver
Project
105
T1D
92
HPAP
59
AMP
Genome assembly (visualization)
98
GRCh38
98
hg19
Lab
101
Kyle Gaulton, UCSD
92
Klaus Kaestner, Upenn
49
Katalin Susztak, Upenn
10
Bing Ren, UCSD
4
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
award.rfa!
AMP
target.investigated_as!
other context
BIOSAMPLE
ASSAY
256 results
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total RNA-seq
primary cell
monocyte
53
pancreatic alpha cell
42
exocrine cell
39
pancreatic beta cell
11
B cell
2
+ See 23 more…
tissue
kidney
49
islet of Langerhans
8
cell line
HepG2
9
EndoC_BH1
2
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