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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
114
ChIP-seq
92
total RNA-seq
84
ATAC-seq
70
single cell RNA-seq
47
WGBS
18
DNase-seq
7
Hi-C
6
RRBS
1
FAIRE-seq
Assay category
92
Transcription
Date released
39
February, 2023
26
September, 2018
16
September, 2020
December, 2019
5
July, 2019
2
May, 2021
2
October, 2018
2
October, 2019
Available data
81
fastq
39
tsv
37
bam
37
bigWig
Organism
92
Homo sapiens
Biosample type
88
primary cell
cell line
2
in vitro differentiated cells
2
tissue
Organ
474
connective tissue
398
adipose tissue
364
pancreas
170
liver
92
epithelium
62
bone element
56
kidney
20
heart
19
eye
17
brain
9
blood vessel
9
vasculature
7
limb
6
embryo
6
musculature of body
5
nerve
4
artery
4
skeleton
1
pericardium
1
spinal cord
Project
53
HPAP
39
AMP
Genome assembly (visualization)
37
GRCh38
37
hg19
Lab
53
Klaus Kaestner, Upenn
39
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
biosample_type!
cell line
month_released!
December, 2019
organ_slims!
skin of body
BIOSAMPLE
ASSAY
92 results
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total RNA-seq
primary cell
pancreatic alpha cell
52
pancreatic beta cell
21
pancreatic acinar cell
4
pancreatic ductal cell
4
endothelial cell of coronary artery
1
+ See 6 more…
in vitro differentiated cells
endothelial cell
1
intermediate endothelial cell
1
tissue
pigmented layer of retina
2
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