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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1414total RNA-seq
  • 1387ChIP-seq
  • 502ATAC-seq
  • 369single cell RNA-seq
  • 210DNase-seq
  • 87RNA microarray
  • 84snATAC-seq
  • 74WGBS
  • 51pCHi-C
  • 30Hi-C
  • 21RRBS
  • 18small RNA-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 4MeRIP-seq
  • 3snDrop-seq
  • 2Capture-C
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1DNAme array
Assay category
  • 1414Transcription
Date released
  • 467February, 2021
  • 190May, 2020
  • 178May, 2021
  • 120July, 2018
  • 93February, 2023
  • 89August, 2017
  • 57August, 2021
  • 44July, 2019
  • 26May, 2022
  • 26October, 2019
  • 26September, 2018
  • 25February, 2020
  • 19November, 2019
  • 16September, 2020
  • 15February, 2018
  • 11March, 2020
  • 5December, 2019
  • 4November, 2020
  • 2October, 2018
  • 1May, 2023
Available data
  • 1202tsv
  • 1178bam
  • 1174bigWig
  • 232fastq
  • 59txt
  • 2bed bed3+
Organism
  • 1414Homo sapiens
Biosample type
  • 1031tissue
  • 247primary cell
  • 136in vitro differentiated cells
  • cell line
Organ
  • 474connective tissue
  • 398adipose tissue
  • 364pancreas
  • 175liver
  • 97epithelium
  • 62bone element
  • 56kidney
  • 20heart
  • 19eye
  • 17brain
  • 9blood vessel
  • 9vasculature
  • 7limb
  • 6embryo
  • 6musculature of body
  • 5nerve
  • 4artery
  • 4skeleton
  • 1pericardium
  • 1spinal cord
Project
  • 1219AMP
  • 103T1D
  • 92HPAP
Genome assembly (visualization)
  • 1175hg19
  • 1173GRCh38
Lab
  • 1137AMP-T2D consortium
  • 115Kyle Gaulton, UCSD
  • 92Klaus Kaestner, Upenn
  • 49Katalin Susztak, Upenn
  • 20Karen Mohlke, UNC
  • 1Bing Ren, UCSD
Audit category:
  • 94inconsistent ontology term
biosample_type!
  • cell line
BIOSAMPLE
ASSAY

1414 results

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Clear Filters
total RNA-seq
tissue
adipose tissue382
islet of Langerhans292
liver167
bone tissue58
kidney49
primary cell
monocyte54
pancreatic alpha cell52
exocrine cell39
pancreatic beta cell21
hepatocyte5
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)19
induced pluripotent stem cell9
embryonic stem cell7
neural progenitor cell7
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