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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1532
ChIP-seq
328
ATAC-seq
181
DNase-seq
115
total RNA-seq
85
RNA microarray
71
single cell RNA-seq
28
WGBS
28
snATAC-seq
24
Hi-C
11
RRBS
10
MeRIP-seq
9
pCHi-C
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
115
Transcription
Date released
49
August, 2021
26
May, 2022
14
October, 2019
13
February, 2023
6
May, 2021
4
July, 2018
2
March, 2020
1
May, 2023
Available data
tsv
1132
bam
1126
bigWig
117
fastq
59
txt
Organism
115
Homo sapiens
Biosample type
106
tissue
primary cell
9
in vitro differentiated cells
Organ
49
kidney
20
liver
18
pancreas
14
eye
5
connective tissue
4
bone element
4
skeleton
1
adipose tissue
Project
108
AMP
7
T1D
Genome assembly (visualization)
1
GRCh38
1
hg19
Lab
49
Katalin Susztak, Upenn
29
AMP-T2D consortium
20
Karen Mohlke, UNC
17
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
biosample_type!
primary cell
files.file_type!
tsv
organ_slims!
blood
BIOSAMPLE
ASSAY
115 results
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total RNA-seq
tissue
kidney
49
islet of Langerhans
31
liver
20
acetabular part of hip bone
1
adipose tissue
1
+ See 4 more…
in vitro differentiated cells
embryonic stem cell
5
immature adipocyte
2
adipocyte
1
preadipocyte
1
See all biosamples
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