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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
378
total RNA-seq
148
ChIP-seq
93
ATAC-seq
84
RNA microarray
11
snATAC-seq
10
MeRIP-seq
8
DNase-seq
6
Hi-C
6
single cell RNA-seq
4
WGBS
2
Capture-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
378
Transcription
Date released
120
July, 2018
89
August, 2017
84
February, 2021
41
May, 2021
20
November, 2019
9
February, 2023
6
May, 2022
5
March, 2020
2
July, 2019
1
August, 2021
1
February, 2020
Available data
360
bam
356
tsv
354
bigWig
97
fastq
10
txt
Organism
378
Homo sapiens
Biosample type
345
tissue
primary cell
33
cell line
Organ
464
connective tissue
397
adipose tissue
316
pancreas
184
liver
68
heart
62
bone element
59
blood vessel
59
vasculature
54
artery
54
kidney
38
epithelium
19
eye
17
brain
14
embryo
7
limb
5
musculature of body
5
nerve
4
skeleton
1
spinal cord
Project
369
AMP
9
T1D
Genome assembly (visualization)
354
GRCh38
354
hg19
Lab
365
AMP-T2D consortium
12
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
33
inconsistent ontology term
biosample_type!
primary cell
organ_slims!
spleen
BIOSAMPLE
ASSAY
378 results
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Clear Filters
total RNA-seq
tissue
islet of Langerhans
278
bone tissue
58
body of pancreas
3
pancreas
2
acetabular part of hip bone
1
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cell line
EndoC_BH1
33
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