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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1592ChIP-seq
  • 1280total RNA-seq
  • 331ATAC-seq
  • 182single cell RNA-seq
  • 181DNase-seq
  • 87RNA microarray
  • 40pCHi-C
  • 28WGBS
  • 28snATAC-seq
  • 24Hi-C
  • 16small RNA-seq
  • 11RRBS
  • 10MeRIP-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 4FAIRE-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 1280Transcription
Date released
  • 544February, 2021
  • 143May, 2020
  • 127May, 2021
  • 120July, 2018
  • 89August, 2017
  • 74August, 2021
  • 31July, 2019
  • 28October, 2019
  • 26May, 2022
  • 25February, 2020
  • 20November, 2019
  • 17February, 2023
  • 15February, 2018
  • 15March, 2020
  • 5January, 2019
  • 1May, 2023
Available data
  • 1165tsv
  • 1132bam
  • 1126bigWig
  • 117fastq
  • 59txt
Organism
  • 1280Homo sapiens
Biosample type
  • 1031tissue
  • primary cell
  • 136in vitro differentiated cells
  • 113cell line
Organ
  • 464connective tissue
  • 397adipose tissue
  • 316pancreas
  • 184liver
  • 68heart
  • 62bone element
  • 59blood vessel
  • 59vasculature
  • 54artery
  • 54kidney
  • 38epithelium
  • 19eye
  • 17brain
  • 14embryo
  • 7limb
  • 5musculature of body
  • 5nerve
  • 4skeleton
  • 1spinal cord
Project
  • 1271AMP
  • 9T1D
Genome assembly (visualization)
  • 1127GRCh38
  • 1127hg19
Lab
  • 1184AMP-T2D consortium
  • 49Katalin Susztak, Upenn
  • 20Karen Mohlke, UNC
  • 17Kyle Gaulton, UCSD
  • 10Bing Ren, UCSD
Audit category:
  • 126inconsistent ontology term
biosample_type!
  • primary cell
BIOSAMPLE
ASSAY

1280 results

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Clear Filters
total RNA-seq
tissue
adipose tissue382
islet of Langerhans292
liver167
bone tissue58
kidney49
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)19
induced pluripotent stem cell9
embryonic stem cell7
neural progenitor cell7
cell line
smooth muscle cell of the coronary artery52
EndoC_BH133
HepG214
H1-hESC8
early embryonic cell2
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