Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
129
ChIP-seq
129
total RNA-seq
91
ATAC-seq
70
single cell RNA-seq
47
WGBS
19
DNase-seq
8
Hi-C
6
RRBS
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
Assay category
129
Transcription
Date released
37
February, 2023
26
February, 2021
26
September, 2018
16
September, 2020
6
May, 2021
5
December, 2019
5
July, 2019
3
October, 2019
2
March, 2020
2
October, 2018
1
November, 2019
Available data
81
fastq
76
bam
76
bigWig
76
tsv
Organism
129
Homo sapiens
Biosample type
93
primary cell
34
cell line
2
in vitro differentiated cells
tissue
Organ
129
epithelium
114
pancreas
57
heart
54
artery
54
blood vessel
54
vasculature
19
liver
15
connective tissue
14
embryo
10
kidney
1
adipose tissue
1
musculature of body
1
pericardium
Project
74
AMP
53
HPAP
2
T1D
Genome assembly (visualization)
76
GRCh38
76
hg19
Lab
76
AMP-T2D consortium
53
Klaus Kaestner, Upenn
Audit category:
34
inconsistent ontology term
biosample_type!
tissue
month_released!
February, 2020
November, 2020
BIOSAMPLE
ASSAY
129 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
primary cell
pancreatic alpha cell
52
pancreatic beta cell
21
hepatocyte
5
pancreatic acinar cell
4
pancreatic ductal cell
4
+ See 7 more…
cell line
EndoC_BH1
33
glomerular visceral epithelial cell
1
in vitro differentiated cells
endothelial cell
1
intermediate endothelial cell
1
See all biosamples
Download