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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 964ChIP-seq
  • 496total RNA-seq
  • 271ATAC-seq
  • 189single cell RNA-seq
  • 56snATAC-seq
  • 48WGBS
  • 34DNase-seq
  • 32pCHi-C
  • 18Hi-C
  • 10RRBS
  • 6MeRIP-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 2HiChIP
  • 2small RNA-seq
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1FAIRE-seq
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 496Transcription
Date released
  • 143May, 2021
  • 101February, 2021
  • 80February, 2023
  • 47May, 2020
  • 26September, 2018
  • 24August, 2021
  • 16September, 2020
  • 15February, 2018
  • 13July, 2019
  • 8October, 2019
  • 6March, 2020
  • 5December, 2019
  • 5January, 2019
  • 4November, 2020
  • 2October, 2018
  • 1November, 2019
Available data
  • 390tsv
  • 383bigWig
  • 381bam
  • 140fastq
  • 2bed bed3+
Organism
  • 496Homo sapiens
Biosample type
  • tissue
  • 247primary cell
  • 136in vitro differentiated cells
  • 113cell line
Organ
  • 129epithelium
  • 114pancreas
  • 57heart
  • 54artery
  • 54blood vessel
  • 54vasculature
  • 19connective tissue
  • 19liver
  • 14embryo
  • 10kidney
  • 1adipose tissue
  • 1musculature of body
  • 1pericardium
Project
  • 306AMP
  • 98T1D
  • 92HPAP
Genome assembly (visualization)
  • 383hg19
  • 381GRCh38
Lab
  • 292AMP-T2D consortium
  • 103Kyle Gaulton, UCSD
  • 92Klaus Kaestner, Upenn
  • 9Bing Ren, UCSD
Audit category:
  • 129inconsistent ontology term
biosample_type!
  • tissue
BIOSAMPLE
ASSAY

496 results

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Clear Filters
total RNA-seq
primary cell
monocyte54
pancreatic alpha cell52
exocrine cell39
pancreatic beta cell21
hepatocyte5
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)19
induced pluripotent stem cell9
embryonic stem cell7
neural progenitor cell7
cell line
smooth muscle cell of the coronary artery52
EndoC_BH133
HepG214
H1-hESC8
early embryonic cell2
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