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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
108
total RNA-seq
64
ChIP-seq
29
ATAC-seq
6
MeRIP-seq
6
pCHi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
108
Transcription
Date released
78
February, 2021
17
August, 2021
4
March, 2020
4
May, 2021
4
October, 2019
1
November, 2019
Available data
108
tsv
99
bam
99
bigWig
Organism
108
Homo sapiens
Biosample type
934
tissue
127
primary cell
121
in vitro differentiated cells
108
cell line
Organ
52
artery
52
blood vessel
52
heart
52
vasculature
34
epithelium
33
pancreas
9
liver
8
embryo
4
kidney
Project
106
AMP
2
T1D
Genome assembly (visualization)
99
GRCh38
99
hg19
Lab
99
AMP-T2D consortium
9
Bing Ren, UCSD
Audit category:
36
inconsistent ontology term
files.file_type!
fastq
month_released!
January, 2019
BIOSAMPLE
ASSAY
108 results
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total RNA-seq
cell line
smooth muscle cell of the coronary artery
52
EndoC_BH1
33
HepG2
9
H1-hESC
8
early embryonic cell
2
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