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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 484ChIP-seq
  • 113total RNA-seq
  • 29ATAC-seq
  • 6MeRIP-seq
  • 6pCHi-C
  • 5STARR-seq
  • 4Hi-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 2Capture-C
  • 2DNase-seq
  • 2HiChIP
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1MPRA
  • 1WGBS
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 113Transcription
Date released
  • 78February, 2021
  • 17August, 2021
  • 5January, 2019
  • 4March, 2020
  • 4May, 2021
  • 4October, 2019
  • 1November, 2019
Available data
  • 113tsv
  • 104bam
  • 104bigWig
  • 5fastq
Organism
  • 113Homo sapiens
Biosample type
  • 1031tissue
  • 247primary cell
  • 136in vitro differentiated cells
  • 113cell line
Organ
  • 52artery
  • 52blood vessel
  • 52heart
  • 52vasculature
  • 34epithelium
  • 33pancreas
  • 14liver
  • 8embryo
  • 4kidney
Project
  • 111AMP
  • 2T1D
Genome assembly (visualization)
  • 104GRCh38
  • 104hg19
Lab
  • 104AMP-T2D consortium
  • 9Bing Ren, UCSD
Audit category:
  • 36inconsistent ontology term
BIOSAMPLE
ASSAY

113 results

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total RNA-seq
cell line
smooth muscle cell of the coronary artery52
EndoC_BH133
HepG214
H1-hESC8
early embryonic cell2
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