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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1078
total RNA-seq
862
ChIP-seq
300
ATAC-seq
182
single cell RNA-seq
176
DNase-seq
87
RNA microarray
30
pCHi-C
28
snATAC-seq
20
Hi-C
18
WGBS
16
small RNA-seq
6
RRBS
4
GRO-seq
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
2
Capture-C
Assay category
1078
Transcription
Date released
466
February, 2021
143
May, 2020
123
May, 2021
120
July, 2018
August, 2017
57
August, 2021
31
July, 2019
26
May, 2022
25
February, 2020
24
October, 2019
19
November, 2019
17
February, 2023
15
February, 2018
11
March, 2020
1
May, 2023
Available data
963
tsv
939
bam
933
bigWig
59
txt
23
fastq
Organism
1078
Homo sapiens
Biosample type
942
tissue
247
primary cell
136
in vitro differentiated cells
113
cell line
Organ
464
connective tissue
397
adipose tissue
194
pancreas
170
liver
62
bone element
50
kidney
19
eye
17
brain
16
heart
7
blood vessel
7
limb
7
vasculature
6
embryo
5
musculature of body
5
nerve
4
epithelium
4
skeleton
2
artery
1
spinal cord
Project
1071
AMP
7
T1D
Genome assembly (visualization)
934
GRCh38
934
hg19
Lab
991
AMP-T2D consortium
49
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
17
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
90
inconsistent ontology term
month_released!
August, 2017
BIOSAMPLE
ASSAY
1078 results
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total RNA-seq
tissue
adipose tissue
382
islet of Langerhans
203
liver
167
bone tissue
58
kidney
49
+ See 47 more…
in vitro differentiated cells
cardiomyocytes
59
cardiac precursors (cardiac muscle cell)
19
induced pluripotent stem cell
9
embryonic stem cell
7
neural progenitor cell
7
+ See 21 more…
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