Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
192
total RNA-seq
187
ATAC-seq
187
single cell RNA-seq
148
ChIP-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
10
RRBS
6
Hi-C
2
small RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
192
Transcription
Date released
76
February, 2023
May, 2021
47
May, 2020
26
September, 2018
16
September, 2020
13
July, 2019
5
December, 2019
4
November, 2020
2
October, 2018
2
October, 2019
1
February, 2021
Available data
120
fastq
98
bam
98
bigWig
98
tsv
Organism
192
Homo sapiens
Biosample type
992
tissue
192
primary cell
109
cell line
52
in vitro differentiated cells
Organ
93
epithelium
81
pancreas
10
connective tissue
6
kidney
5
liver
4
heart
2
artery
2
blood vessel
2
vasculature
1
adipose tissue
1
musculature of body
1
pericardium
Project
92
HPAP
55
AMP
45
T1D
Genome assembly (visualization)
98
GRCh38
98
hg19
Lab
92
Klaus Kaestner, Upenn
55
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
4
inconsistent ontology term
files.file_type!
hdf5
month_released!
May, 2021
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
192 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
primary cell
pancreatic alpha cell
52
exocrine cell
39
pancreatic beta cell
21
hepatocyte
5
osteoblast
5
+ See 44 more…
See all biosamples
Download