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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
ChIP-seq
186
single cell RNA-seq
170
total RNA-seq
85
ATAC-seq
56
snATAC-seq
47
WGBS
30
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
170
Transcription
Date released
76
February, 2023
55
May, 2021
May, 2020
September, 2018
16
September, 2020
13
July, 2019
5
December, 2019
November, 2020
2
October, 2018
2
October, 2019
1
February, 2021
Available data
94
fastq
77
bigWig
75
bam
75
tsv
2
bed bed3+
Organism
170
Homo sapiens
Biosample type
888
tissue
170
primary cell
136
in vitro differentiated cells
113
cell line
Organ
67
epithelium
55
pancreas
6
connective tissue
6
kidney
5
liver
4
heart
2
artery
2
blood vessel
2
vasculature
1
adipose tissue
1
musculature of body
1
pericardium
Project
92
HPAP
51
T1D
27
AMP
Genome assembly (visualization)
77
hg19
75
GRCh38
Lab
92
Klaus Kaestner, Upenn
53
Kyle Gaulton, UCSD
25
AMP-T2D consortium
month_released!
May, 2020
November, 2020
September, 2018
BIOSAMPLE
ASSAY
170 results
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total RNA-seq
primary cell
monocyte
52
pancreatic alpha cell
42
exocrine cell
39
pancreatic beta cell
11
hepatocyte
5
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