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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
858
total RNA-seq
647
ChIP-seq
168
DNase-seq
122
ATAC-seq
107
single cell RNA-seq
87
RNA microarray
24
pCHi-C
17
WGBS
16
small RNA-seq
13
Hi-C
8
RRBS
3
snDrop-seq
2
FAIRE-seq
2
snATAC-seq
Assay category
858
Transcription
Date released
444
February, 2021
143
May, 2020
118
July, 2018
38
May, 2021
31
July, 2019
25
February, 2020
22
October, 2019
19
November, 2019
9
March, 2020
8
February, 2023
1
May, 2023
Available data
924
tsv
895
bam
895
bigWig
fastq
4
txt
Organism
858
Homo sapiens
Biosample type
858
tissue
116
in vitro differentiated cells
99
cell line
29
primary cell
Organ
455
connective tissue
397
adipose tissue
179
pancreas
150
liver
62
bone element
19
eye
17
brain
15
heart
7
blood vessel
7
limb
7
vasculature
5
musculature of body
5
nerve
4
skeleton
2
artery
2
epithelium
1
kidney
1
spinal cord
Project
856
AMP
2
T1D
Genome assembly (visualization)
805
GRCh38
805
hg19
Lab
858
AMP-T2D consortium
49
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
6
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
files.file_type!
fastq
organ_slims!
mammary gland
BIOSAMPLE
ASSAY
858 results
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total RNA-seq
tissue
adipose tissue
382
islet of Langerhans
189
liver
147
bone tissue
58
subcutaneous adipose tissue
7
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