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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
861
total RNA-seq
752
ChIP-seq
239
ATAC-seq
179
single cell RNA-seq
174
DNase-seq
87
RNA microarray
28
snATAC-seq
24
pCHi-C
23
WGBS
15
Hi-C
13
small RNA-seq
10
RRBS
4
FAIRE-seq
3
snDrop-seq
Assay category
861
Transcription
Date released
444
February, 2021
120
July, 2018
89
August, 2017
50
August, 2021
39
May, 2021
27
July, 2019
24
February, 2020
21
October, 2019
19
November, 2019
13
February, 2023
8
March, 2020
6
May, 2022
1
May, 2023
Available data
775
tsv
752
bam
746
bigWig
97
fastq
59
txt
Organism
861
Homo sapiens
Biosample type
861
tissue
238
primary cell
136
in vitro differentiated cells
99
cell line
Organ
455
connective tissue
397
adipose tissue
283
pancreas
liver
62
bone element
50
kidney
19
eye
17
brain
15
heart
7
blood vessel
7
limb
7
vasculature
5
musculature of body
5
nerve
4
skeleton
2
artery
2
epithelium
1
spinal cord
Project
854
AMP
7
T1D
Genome assembly (visualization)
747
GRCh38
747
hg19
Lab
799
AMP-T2D consortium
49
Katalin Susztak, Upenn
12
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
month_released!
November, 2020
organ_slims!
liver
BIOSAMPLE
ASSAY
861 results
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total RNA-seq
tissue
adipose tissue
382
islet of Langerhans
292
bone tissue
58
kidney
49
subcutaneous adipose tissue
7
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