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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
254
single cell RNA-seq
250
ATAC-seq
241
total RNA-seq
184
ChIP-seq
87
RNA microarray
74
snATAC-seq
57
WGBS
55
pCHi-C
29
Hi-C
21
RRBS
10
MeRIP-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
241
Transcription
Date released
93
February, 2023
59
August, 2021
25
February, 2020
20
May, 2022
16
September, 2020
14
October, 2019
7
May, 2021
4
July, 2018
2
March, 2020
May, 2020
1
May, 2023
Available data
1127
tsv
bam
bigWig
237
fastq
59
txt
2
bed bed3+
Organism
241
Homo sapiens
Biosample type
130
tissue
93
primary cell
9
cell line
9
in vitro differentiated cells
Organ
67
pancreas
55
epithelium
49
kidney
30
liver
19
eye
12
brain
7
connective tissue
4
bone element
4
skeleton
3
adipose tissue
3
blood vessel
3
heart
3
limb
3
vasculature
2
artery
2
musculature of body
1
nerve
1
spinal cord
Project
142
AMP
92
HPAP
7
T1D
Genome assembly (visualization)
1
GRCh38
1
hg19
Lab
92
Klaus Kaestner, Upenn
59
AMP-T2D consortium
49
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
11
Kyle Gaulton, UCSD
10
Bing Ren, UCSD
Audit category:
3
inconsistent ontology term
files.file_type!
bam
bigWig
month_released!
April, 2020
May, 2020
BIOSAMPLE
ASSAY
241 results
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Clear Filters
total RNA-seq
tissue
kidney
49
islet of Langerhans
26
liver
20
retina
3
pigmented layer of retina
2
+ See 30 more…
primary cell
pancreatic alpha cell
42
exocrine cell
39
pancreatic beta cell
11
monocyte
1
cell line
HepG2
9
in vitro differentiated cells
embryonic stem cell
5
immature adipocyte
2
adipocyte
1
preadipocyte
1
See all biosamples
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