Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 356ATAC-seq
  • 293ChIP-seq
  • 263single cell RNA-seq
  • 245total RNA-seq
  • 87RNA microarray
  • 84snATAC-seq
  • 57WGBS
  • 56pCHi-C
  • 34Hi-C
  • 21RRBS
  • 10MeRIP-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3DNase-seq
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 245Transcription
Date released
  • 93February, 2023
  • 59August, 2021
  • 25February, 2020
  • 20May, 2022
  • 16September, 2020
  • 14October, 2019
  • 9May, 2021
  • 4July, 2018
  • 2March, 2020
  • 2May, 2020
  • 1May, 2023
Available data
  • 1315tsv
  • bam
  • 1278bigWig
  • 237fastq
  • 59txt
  • 2bed bed3+
Organism
  • 245Homo sapiens
Biosample type
  • 130tissue
  • 97primary cell
  • 9cell line
  • 9in vitro differentiated cells
Organ
  • 67pancreas
  • 55epithelium
  • 49kidney
  • 30liver
  • 19eye
  • 12brain
  • 7connective tissue
  • 4bone element
  • 4skeleton
  • 3adipose tissue
  • 3blood vessel
  • 3heart
  • 3limb
  • 3vasculature
  • 2artery
  • 2musculature of body
  • 1nerve
  • 1spinal cord
Project
  • 146AMP
  • 92HPAP
  • 7T1D
Genome assembly (visualization)
  • 3hg19
  • 1GRCh38
Lab
  • 92Klaus Kaestner, Upenn
  • 61AMP-T2D consortium
  • 49Katalin Susztak, Upenn
  • 20Karen Mohlke, UNC
  • 13Kyle Gaulton, UCSD
  • 10Bing Ren, UCSD
Audit category:
  • 3inconsistent ontology term
files.file_type!
  • bam
BIOSAMPLE
ASSAY

245 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
tissue
kidney49
islet of Langerhans26
liver20
retina3
pigmented layer of retina2
primary cell
pancreatic alpha cell42
exocrine cell39
pancreatic beta cell11
CD8-positive, alpha-beta T cell2
monocyte1
cell line
HepG29
in vitro differentiated cells
embryonic stem cell5
immature adipocyte2
adipocyte1
preadipocyte1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego