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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
417
ChIP-seq
193
ATAC-seq
111
single cell RNA-seq
87
RNA microarray
59
total RNA-seq
39
pCHi-C
21
Hi-C
21
RRBS
11
WGBS
3
DNase-seq
3
snDrop-seq
2
Capture-C
2
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
DNAme array
1
MPRA
Assay category
59
Transcription
Date released
25
February, 2020
14
October, 2019
12
February, 2023
4
July, 2018
2
March, 2020
May, 2020
1
May, 2021
1
May, 2023
Available data
1066
tsv
1037
bam
bigWig
139
fastq
4
txt
Organism
59
Homo sapiens
Biosample type
54
tissue
4
in vitro differentiated cells
1
primary cell
Organ
19
eye
12
brain
7
connective tissue
7
pancreas
4
bone element
4
skeleton
3
adipose tissue
3
blood vessel
3
heart
3
limb
3
vasculature
2
artery
2
epithelium
2
musculature of body
1
liver
1
nerve
1
spinal cord
Project
57
AMP
2
T1D
Genome assembly (visualization)
1
GRCh38
1
hg19
Lab
92
Klaus Kaestner, Upenn
59
AMP-T2D consortium
49
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
17
Kyle Gaulton, UCSD
10
Bing Ren, UCSD
Audit category:
3
inconsistent ontology term
files.file_type!
bigWig
month_released!
April, 2020
May, 2020
BIOSAMPLE
ASSAY
59 results
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total RNA-seq
tissue
islet of Langerhans
20
retina
3
pigmented layer of retina
2
Ammon's horn
1
C1 segment of cervical spinal cord
1
+ See 27 more…
in vitro differentiated cells
immature adipocyte
2
adipocyte
1
preadipocyte
1
primary cell
monocyte
1
See all biosamples
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