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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1290total RNA-seq
  • 1014ChIP-seq
  • 470ATAC-seq
  • 235single cell RNA-seq
  • 200DNase-seq
  • 87RNA microarray
  • 58WGBS
  • 57snATAC-seq
  • 56pCHi-C
  • 33Hi-C
  • 18small RNA-seq
  • 17RRBS
  • 10MeRIP-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3FAIRE-seq
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 1290Transcription
Date released
  • 545February, 2021
  • 190May, 2020
  • 182May, 2021
  • 118July, 2018
  • 74August, 2021
  • 44July, 2019
  • 30October, 2019
  • 25February, 2020
  • 20May, 2022
  • 20November, 2019
  • 17February, 2023
  • 15March, 2020
  • 5December, 2019
  • 4November, 2020
  • 1May, 2023
Available data
  • 1315tsv
  • 1282bam
  • 1278bigWig
  • fastq
  • 59txt
  • 2bed bed3+
Organism
  • 1290Homo sapiens
Biosample type
  • 934tissue
  • 127primary cell
  • 121in vitro differentiated cells
  • 108cell line
Organ
  • 474connective tissue
  • 398adipose tissue
  • 219pancreas
  • 184liver
  • 72heart
  • 62bone element
  • 61blood vessel
  • 61vasculature
  • 60kidney
  • 56artery
  • 50epithelium
  • 19eye
  • 17brain
  • 10embryo
  • 7limb
  • 6musculature of body
  • 5nerve
  • 4skeleton
  • 1pericardium
  • 1spinal cord
Project
  • 1185AMP
  • 105T1D
Genome assembly (visualization)
  • 1140hg19
  • 1138GRCh38
Lab
  • 1102AMP-T2D consortium
  • 109Kyle Gaulton, UCSD
  • 49Katalin Susztak, Upenn
  • 20Karen Mohlke, UNC
  • 10Bing Ren, UCSD
Audit category:
  • 130inconsistent ontology term
files.file_type!
  • fastq
BIOSAMPLE
ASSAY

1290 results

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Clear Filters
total RNA-seq
tissue
adipose tissue382
islet of Langerhans195
liver167
bone tissue58
kidney49
primary cell
monocyte54
hepatocyte5
osteoblast5
CD8-positive, alpha-beta T cell4
B cell2
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)19
induced pluripotent stem cell9
neural progenitor cell7
adipocyte5
cell line
smooth muscle cell of the coronary artery52
EndoC_BH133
HepG29
H1-hESC8
early embryonic cell2
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