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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1871ChIP-seq
  • 517ATAC-seq
  • 212DNase-seq
  • 212total RNA-seq
  • 158single cell RNA-seq
  • 85RNA microarray
  • 84snATAC-seq
  • 69WGBS
  • 34Hi-C
  • 26pCHi-C
  • 21RRBS
  • 10MeRIP-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 212Transcription
Date released
  • 89February, 2023
  • 49August, 2021
  • 26May, 2022
  • 16September, 2020
  • 14October, 2019
  • 9May, 2021
  • 4July, 2018
  • 2March, 2020
  • 2May, 2020
  • 1May, 2023
Available data
  • tsv
  • 1282bam
  • 1278bigWig
  • 237fastq
  • 59txt
  • 2bed bed3+
Organism
  • 212Homo sapiens
Biosample type
  • 106tissue
  • 97primary cell
  • 9in vitro differentiated cells
Organ
  • 71pancreas
  • 53epithelium
  • 49kidney
  • 20liver
  • 14eye
  • 5connective tissue
  • 4bone element
  • 4skeleton
  • 1adipose tissue
Project
  • 113AMP
  • 92HPAP
  • 7T1D
Genome assembly (visualization)
  • 3hg19
  • 1GRCh38
Lab
  • 92Klaus Kaestner, Upenn
  • 49Katalin Susztak, Upenn
  • 32AMP-T2D consortium
  • 20Karen Mohlke, UNC
  • 19Kyle Gaulton, UCSD
Audit category:
  • 2inconsistent ontology term
files.file_type!
  • tsv
BIOSAMPLE
ASSAY

212 results

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Clear Filters
total RNA-seq
tissue
kidney49
islet of Langerhans31
liver20
acetabular part of hip bone1
adipose tissue1
primary cell
pancreatic alpha cell42
exocrine cell39
pancreatic beta cell11
CD8-positive, alpha-beta T cell2
monocyte1
in vitro differentiated cells
embryonic stem cell5
immature adipocyte2
adipocyte1
preadipocyte1
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