Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1315total RNA-seq
  • 211single cell RNA-seq
  • 31pCHi-C
  • 18small RNA-seq
  • 14ATAC-seq
  • 6WGBS
  • 3snDrop-seq
  • 2RNA microarray
Assay category
  • 1315Transcription
Date released
  • 545February, 2021
  • 188May, 2020
  • 173May, 2021
  • 116July, 2018
  • 89August, 2017
  • 44July, 2019
  • 26September, 2018
  • 25August, 2021
  • 25February, 2020
  • 20November, 2019
  • 16October, 2019
  • 15February, 2018
  • 13March, 2020
  • 5December, 2019
  • 5January, 2019
  • 4February, 2023
  • 4November, 2020
  • 2October, 2018
Available data
  • 1315tsv
  • 1282bam
  • 1278bigWig
  • 237fastq
  • 59txt
  • 2bed bed3+
Organism
  • 1315Homo sapiens
Biosample type
  • 925tissue
  • 150primary cell
  • 127in vitro differentiated cells
  • 113cell line
Organ
  • 469connective tissue
  • 397adipose tissue
  • 326pancreas
  • 169liver
  • 78epithelium
  • 72heart
  • 61blood vessel
  • 61vasculature
  • 58bone element
  • 56artery
  • 17brain
  • 14embryo
  • 11kidney
  • 7limb
  • 6musculature of body
  • 5eye
  • 5nerve
  • 1pericardium
  • 1spinal cord
Project
  • 1217AMP
  • 98T1D
Genome assembly (visualization)
  • 1276GRCh38
  • 1276hg19
Lab
  • 1209AMP-T2D consortium
  • 96Kyle Gaulton, UCSD
  • 10Bing Ren, UCSD
Audit category:
  • 128inconsistent ontology term
BIOSAMPLE
ASSAY

1315 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
tissue
adipose tissue381
islet of Langerhans261
liver147
bone tissue58
subcutaneous adipose tissue7
primary cell
monocyte53
pancreatic alpha cell10
pancreatic beta cell10
hepatocyte5
osteoblast5
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)19
induced pluripotent stem cell9
neural progenitor cell7
adipocyte4
cell line
smooth muscle cell of the coronary artery52
EndoC_BH133
HepG214
H1-hESC8
early embryonic cell2
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego