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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
272
total RNA-seq
172
ATAC-seq
157
ChIP-seq
152
single cell RNA-seq
80
snATAC-seq
47
WGBS
7
Hi-C
4
MeRIP-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
272
Transcription
Date released
81
February, 2023
54
May, 2021
50
August, 2021
45
May, 2020
26
May, 2022
16
September, 2020
Available data
102
bam
98
bigWig
98
fastq
97
tsv
55
txt
2
bed bed3+
Organism
272
Homo sapiens
Biosample type
190
primary cell
82
tissue
Organ
66
pancreas
53
epithelium
49
kidney
20
liver
Project
101
T1D
92
HPAP
79
AMP
Genome assembly (visualization)
98
hg19
96
GRCh38
Lab
AMP-T2D consortium
110
Kyle Gaulton, UCSD
92
Klaus Kaestner, Upenn
49
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
1
Bing Ren, UCSD
Audit category:
4
inconsistent ontology term
lab.title!
AMP-T2D consortium
month_released!
December, 2017
replicates.library.biosample.life_stage!
unknown
BIOSAMPLE
ASSAY
272 results
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total RNA-seq
primary cell
monocyte
53
pancreatic alpha cell
42
exocrine cell
39
pancreatic beta cell
11
CD8-positive, alpha-beta T cell
4
+ See 23 more…
tissue
kidney
49
liver
20
islet of Langerhans
12
pancreas
1
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