Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
395
total RNA-seq
152
ATAC-seq
140
ChIP-seq
80
single cell RNA-seq
51
WGBS
11
snATAC-seq
10
MeRIP-seq
9
Hi-C
8
DNase-seq
2
Capture-C
2
FAIRE-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
395
Transcription
Date released
120
July, 2018
89
August, 2017
42
February, 2023
41
May, 2021
26
February, 2021
26
September, 2018
20
November, 2019
16
September, 2020
6
May, 2022
5
March, 2020
July, 2019
2
October, 2018
1
August, 2021
1
February, 2020
Available data
328
bam
324
tsv
322
bigWig
178
fastq
6
txt
Organism
395
Homo sapiens
Biosample type
281
tissue
81
primary cell
33
cell line
Organ
461
connective tissue
395
pancreas
389
adipose tissue
185
liver
126
epithelium
62
bone element
62
heart
56
blood vessel
56
vasculature
55
kidney
54
artery
19
eye
14
embryo
13
brain
7
limb
5
nerve
4
musculature of body
4
skeleton
1
spinal cord
Project
333
AMP
53
HPAP
9
T1D
Genome assembly (visualization)
322
GRCh38
322
hg19
Lab
329
AMP-T2D consortium
53
Klaus Kaestner, Upenn
12
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
33
inconsistent ontology term
month_released!
July, 2019
organ_slims!
thymus
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
395 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
tissue
islet of Langerhans
278
pancreas
2
body of pancreas
1
primary cell
pancreatic alpha cell
52
pancreatic beta cell
21
pancreatic acinar cell
4
pancreatic ductal cell
4
cell line
EndoC_BH1
33
Download