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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1653ChIP-seq
  • 1130total RNA-seq
  • 379ATAC-seq
  • 289single cell RNA-seq
  • 204DNase-seq
  • 87RNA microarray
  • 74snATAC-seq
  • 56pCHi-C
  • 25Hi-C
  • 24WGBS
  • 19RRBS
  • 16small RNA-seq
  • 5GRO-seq
  • 5STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 3FAIRE-seq
  • 3snDrop-seq
  • 2Capture-C
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 1130Transcription
Date released
  • 519February, 2021
  • 190May, 2020
  • 141May, 2021
  • 73August, 2021
  • 51February, 2023
  • 42July, 2019
  • 30October, 2019
  • 24February, 2020
  • 20May, 2022
  • 15February, 2018
  • 10March, 2020
  • 5December, 2019
  • 5January, 2019
  • 4November, 2020
  • 1May, 2023
Available data
  • 989tsv
  • 954bigWig
  • 952bam
  • 59fastq
  • 53txt
  • 2bed bed3+
Organism
  • 1130Homo sapiens
Biosample type
  • 748tissue
  • 166primary cell
  • 136in vitro differentiated cells
  • 80cell line
Organ
  • 474connective tissue
  • 398adipose tissue
  • pancreas
  • 189liver
  • 131epithelium
  • 72heart
  • 62bone element
  • 61blood vessel
  • 61vasculature
  • 60kidney
  • 56artery
  • 19eye
  • 17brain
  • 14embryo
  • 7limb
  • 6musculature of body
  • 5nerve
  • 4skeleton
  • 1pericardium
  • 1spinal cord
Project
  • 995AMP
  • 96T1D
  • 39HPAP
Genome assembly (visualization)
  • 955hg19
  • 953GRCh38
Lab
  • 910AMP-T2D consortium
  • 103Kyle Gaulton, UCSD
  • 49Katalin Susztak, Upenn
  • 39Klaus Kaestner, Upenn
  • 20Karen Mohlke, UNC
  • 9Bing Ren, UCSD
Audit category:
  • 97inconsistent ontology term
organ_slims!
  • pancreas
BIOSAMPLE
ASSAY

1130 results

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Clear Filters
total RNA-seq
tissue
adipose tissue382
liver167
bone tissue58
kidney49
islet of Langerhans14
primary cell
monocyte54
exocrine cell39
hepatocyte5
osteoblast5
CD8-positive, alpha-beta T cell4
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)19
induced pluripotent stem cell9
embryonic stem cell7
neural progenitor cell7
cell line
smooth muscle cell of the coronary artery52
HepG214
H1-hESC8
early embryonic cell2
RCC 7860 HIF1a re-expression1
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