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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1871
ChIP-seq
531
ATAC-seq
212
DNase-seq
84
snATAC-seq
75
WGBS
68
total RNA-seq
57
pCHi-C
34
Hi-C
21
RRBS
5
FAIRE-seq
5
GRO-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
single cell RNA-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
RNA microarray
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
68
Transcription
Date released
45
May, 2020
13
July, 2019
5
January, 2019
4
October, 2019
1
February, 2021
Available data
68
bam
68
bigWig
68
tsv
5
fastq
Organism
68
Homo sapiens
Biosample type
59
primary cell
5
cell line
4
tissue
Organ
6
connective tissue
5
epithelium
5
liver
4
heart
4
kidney
4
limb
4
nerve
2
artery
2
blood vessel
2
vasculature
1
adipose tissue
1
musculature of body
1
pericardium
Project
45
T1D
23
AMP
Genome assembly (visualization)
68
GRCh38
68
hg19
Lab
45
Kyle Gaulton, UCSD
23
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
replicates.library.nucleic_acid_term_name!
RNA
BIOSAMPLE
ASSAY
68 results
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total RNA-seq
primary cell
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
T-helper 1 cell
2
T-helper 17 cell
2
+ See 34 more…
cell line
HepG2
5
tissue
tibial nerve
4
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