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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1459total RNA-seq
  • 366single cell RNA-seq
  • 86RNA microarray
  • 18small RNA-seq
  • 10MeRIP-seq
  • 5STARR-seq
  • 3snDrop-seq
Assay category
  • 1459Transcription
Date released
  • 544February, 2021
  • 182May, 2021
  • 145May, 2020
  • 120July, 2018
  • 93February, 2023
  • 89August, 2017
  • 74August, 2021
  • 31July, 2019
  • 26May, 2022
  • 26October, 2019
  • 26September, 2018
  • 25February, 2020
  • 20November, 2019
  • 16September, 2020
  • 15February, 2018
  • 15March, 2020
  • 5December, 2019
  • 4November, 2020
  • 2October, 2018
  • 1May, 2023
Available data
  • 1247tsv
  • 1214bam
  • 1210bigWig
  • 232fastq
  • 59txt
  • 2bed bed3+
Organism
  • 1459Homo sapiens
Biosample type
  • 1027tissue
  • 188primary cell
  • 136in vitro differentiated cells
  • 108cell line
Organ
  • 468connective tissue
  • 397adipose tissue
  • 397pancreas
  • 184liver
  • 126epithelium
  • 68heart
  • 62bone element
  • 59blood vessel
  • 59vasculature
  • 56kidney
  • 54artery
  • 19eye
  • 17brain
  • 14embryo
  • 5musculature of body
  • 4skeleton
  • 3limb
  • 1nerve
  • 1spinal cord
Project
  • 1307AMP
  • 92HPAP
  • 60T1D
Genome assembly (visualization)
  • 1211hg19
  • 1209GRCh38
Lab
  • 1218AMP-T2D consortium
  • 92Klaus Kaestner, Upenn
  • 70Kyle Gaulton, UCSD
  • 49Katalin Susztak, Upenn
  • 20Karen Mohlke, UNC
  • 10Bing Ren, UCSD
Audit category:
  • 126inconsistent ontology term
BIOSAMPLE
ASSAY

1459 results

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Clear Filters
total RNA-seq
tissue
adipose tissue382
islet of Langerhans292
liver167
bone tissue58
kidney49
primary cell
monocyte52
pancreatic alpha cell52
exocrine cell39
pancreatic beta cell21
hepatocyte5
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)19
induced pluripotent stem cell9
embryonic stem cell7
neural progenitor cell7
cell line
smooth muscle cell of the coronary artery52
EndoC_BH133
HepG29
H1-hESC8
early embryonic cell2
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