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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1690ChIP-seq
  • 1337total RNA-seq
  • 426ATAC-seq
  • 280single cell RNA-seq
  • 185DNase-seq
  • 87RNA microarray
  • 79snATAC-seq
  • 75WGBS
  • 29pCHi-C
  • 25Hi-C
  • 21RRBS
  • 7small RNA-seq
  • 6MeRIP-seq
  • 5GRO-seq
  • 5STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2Capture-C
  • 2FAIRE-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1snDrop-seq
  • 1whole genome sequencing assay
Assay category
  • 1337Transcription
Date released
  • 539February, 2021
  • 147May, 2020
  • 118July, 2018
  • 118May, 2021
  • 89August, 2017
  • 81February, 2023
  • 66August, 2021
  • 27October, 2019
  • 26May, 2022
  • 26September, 2018
  • 21July, 2019
  • 20November, 2019
  • 16September, 2020
  • 14February, 2018
  • 12March, 2020
  • 5December, 2019
  • 5January, 2019
  • 4November, 2020
  • 2October, 2018
  • 1May, 2023
Available data
  • 1147tsv
  • 1140bam
  • 1136bigWig
  • 234fastq
  • 55txt
  • 2bed bed3+
Organism
  • 1337Homo sapiens
Biosample type
  • 972tissue
  • 164primary cell
  • 113cell line
  • 88in vitro differentiated cells
Organ
  • 457connective tissue
  • 390adipose tissue
  • 385pancreas
  • 186liver
  • 122epithelium
  • 60heart
  • 58bone element
  • 56blood vessel
  • 56vasculature
  • 53kidney
  • 52artery
  • 18eye
  • 12embryo
  • 4limb
  • 4nerve
  • 2musculature of body
  • 1brain
Project
  • 1211AMP
  • 92HPAP
  • 34T1D
Genome assembly (visualization)
  • 1137hg19
  • 1135GRCh38
Lab
  • 1126AMP-T2D consortium
  • 92Klaus Kaestner, Upenn
  • 49Katalin Susztak, Upenn
  • 41Kyle Gaulton, UCSD
  • 20Karen Mohlke, UNC
  • 9Bing Ren, UCSD
Audit category:
  • 106inconsistent ontology term
replication_type!
  • anisogenic
BIOSAMPLE
ASSAY

1337 results

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Clear Filters
total RNA-seq
tissue
adipose tissue382
islet of Langerhans282
liver165
bone tissue58
kidney49
primary cell
pancreatic alpha cell52
exocrine cell39
monocyte28
pancreatic beta cell21
hepatocyte5
cell line
smooth muscle cell of the coronary artery52
EndoC_BH133
HepG214
H1-hESC8
early embryonic cell2
in vitro differentiated cells
cardiomyocytes47
cardiac precursors (cardiac muscle cell)19
adipocyte4
pancreatic endoderm4
cardiomyocytes (cardiac muscle cell)2
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