Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1476total RNA-seq
  • 1297ChIP-seq
  • 441ATAC-seq
  • 363single cell RNA-seq
  • 190DNase-seq
  • 87RNA microarray
  • 77snATAC-seq
  • 67WGBS
  • 36pCHi-C
  • 24Hi-C
  • 18small RNA-seq
  • 5GRO-seq
  • 4Capture-C
  • 4FAIRE-seq
  • 4MeRIP-seq
  • 3snDrop-seq
  • 2HiChIP
  • 2RRBS
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1STARR-seq
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 1476Transcription
Date released
  • 527February, 2021
  • 190May, 2020
  • 182May, 2021
  • 120July, 2018
  • 93February, 2023
  • 89August, 2017
  • 66August, 2021
  • 43July, 2019
  • 26May, 2022
  • 26September, 2018
  • 25February, 2020
  • 21October, 2019
  • 20November, 2019
  • 16September, 2020
  • 15February, 2018
  • 10March, 2020
  • 4November, 2020
  • 2October, 2018
  • 1May, 2023
Available data
  • 1264tsv
  • 1231bam
  • 1227bigWig
  • 232fastq
  • 59txt
  • 2bed bed3+
Organism
  • 1476Homo sapiens
Biosample type
  • 1028tissue
  • 241primary cell
  • 114in vitro differentiated cells
  • 93cell line
Organ
  • 474connective tissue
  • 398adipose tissue
  • 395pancreas
  • 178liver
  • 123epithelium
  • 71heart
  • 62bone element
  • 61blood vessel
  • 61vasculature
  • 56artery
  • 56kidney
  • 19eye
  • 16brain
  • 7limb
  • 6embryo
  • 6musculature of body
  • 5nerve
  • 4skeleton
  • 1pericardium
  • 1spinal cord
Project
  • 1281AMP
  • 103T1D
  • 92HPAP
Genome assembly (visualization)
  • 1228hg19
  • 1226GRCh38
Lab
  • 1190AMP-T2D consortium
  • 115Kyle Gaulton, UCSD
  • 92Klaus Kaestner, Upenn
  • 49Katalin Susztak, Upenn
  • 20Karen Mohlke, UNC
  • 10Bing Ren, UCSD
Audit category:
  • 103inconsistent ontology term
replication_type!
  • isogenic
BIOSAMPLE
ASSAY

1476 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
tissue
adipose tissue382
islet of Langerhans292
liver166
bone tissue58
kidney49
primary cell
monocyte54
pancreatic alpha cell52
exocrine cell39
pancreatic beta cell21
osteoblast5
in vitro differentiated cells
cardiomyocytes59
induced pluripotent stem cell9
embryonic stem cell7
neural progenitor cell7
adipocyte5
cell line
smooth muscle cell of the coronary artery52
EndoC_BH131
HepG29
early embryonic cell1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego