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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 755ChIP-seq
  • 241total RNA-seq
  • 195ATAC-seq
  • 95single cell RNA-seq
  • 49DNase-seq
  • 49pCHi-C
  • 19Hi-C
  • 19RRBS
  • 12snATAC-seq
  • 11small RNA-seq
  • 10MeRIP-seq
  • 8WGBS
  • 4FAIRE-seq
  • 4STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2Capture-C
  • 2snDrop-seq
  • 1DNAme array
Assay category
  • 241Transcription
Date released
  • 64May, 2021
  • 43May, 2020
  • 25February, 2020
  • 24February, 2021
  • 24July, 2019
  • 16August, 2021
  • 12February, 2023
  • 12October, 2019
  • 8March, 2020
  • 5December, 2019
  • 5January, 2019
  • 2July, 2018
  • 1February, 2018
Available data
  • 219tsv
  • 193bam
  • 193bigWig
  • 8fastq
  • 4txt
Organism
  • 241Homo sapiens
Biosample type
  • 89primary cell
  • 70in vitro differentiated cells
  • 62tissue
  • 20cell line
Organ
  • 17brain
  • 17connective tissue
  • 17epithelium
  • 14liver
  • 14pancreas
  • 13heart
  • 11kidney
  • 10embryo
  • 8adipose tissue
  • 5blood vessel
  • 5vasculature
  • 4artery
  • 4bone element
  • 4musculature of body
  • 4skeleton
  • 3limb
  • 1eye
  • 1nerve
  • 1pericardium
  • 1spinal cord
Project
  • 168AMP
  • 73T1D
Genome assembly (visualization)
  • 193GRCh38
  • 193hg19
Lab
  • 166AMP-T2D consortium
  • 74Kyle Gaulton, UCSD
  • 1Bing Ren, UCSD
Audit category:
  • 51inconsistent ontology term
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

241 results

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Clear Filters
total RNA-seq
primary cell
monocyte26
hepatocyte5
B cell2
CD8-positive, alpha-beta T cell2
T follicular helper cell2
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)19
cardiomyocytes12
induced pluripotent stem cell9
neural progenitor cell7
embryonic stem cell5
tissue
islet of Langerhans10
heart3
liver3
subcutaneous adipose tissue3
visceral abdominal adipose tissue3
cell line
H1-hESC8
HepG25
EndoC_BH12
RCC 7860 HIF1a re-expression1
RCC 7860 HIF2a over-expression1
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