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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1286total RNA-seq
  • 1116ChIP-seq
  • 336ATAC-seq
  • 274single cell RNA-seq
  • 163DNase-seq
  • 87RNA microarray
  • 72snATAC-seq
  • 67WGBS
  • 15Hi-C
  • 8pCHi-C
  • 7small RNA-seq
  • 5GRO-seq
  • 2Capture-C
  • 2HiChIP
  • 2RRBS
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1FAIRE-seq
  • 1MPRA
  • 1STARR-seq
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1snDrop-seq
  • 1whole genome sequencing assay
Assay category
  • 1286Transcription
Date released
  • 521February, 2021
  • 147May, 2020
  • 118July, 2018
  • 118May, 2021
  • 89August, 2017
  • 81February, 2023
  • 58August, 2021
  • 26May, 2022
  • 26September, 2018
  • 20July, 2019
  • 20November, 2019
  • 18October, 2019
  • 16September, 2020
  • 14February, 2018
  • 7March, 2020
  • 4November, 2020
  • 2October, 2018
  • 1May, 2023
Available data
  • 1096tsv
  • 1089bam
  • 1085bigWig
  • 229fastq
  • 55txt
  • 2bed bed3+
Organism
  • 1286Homo sapiens
Biosample type
  • 969tissue
  • 158primary cell
  • 93cell line
  • 66in vitro differentiated cells
Organ
  • 457connective tissue
  • 390adipose tissue
  • 383pancreas
  • 175liver
  • 114epithelium
  • 59heart
  • 58bone element
  • 56blood vessel
  • 56vasculature
  • 52artery
  • 49kidney
  • 18eye
  • 4embryo
  • 4limb
  • 4nerve
  • 2musculature of body
Project
  • 1162AMP
  • 92HPAP
  • 32T1D
Genome assembly (visualization)
  • 1086hg19
  • 1084GRCh38
Lab
  • 1075AMP-T2D consortium
  • 92Klaus Kaestner, Upenn
  • 49Katalin Susztak, Upenn
  • 41Kyle Gaulton, UCSD
  • 20Karen Mohlke, UNC
  • 9Bing Ren, UCSD
Audit category:
  • 79inconsistent ontology term
BIOSAMPLE
ASSAY

1286 results

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Clear Filters
total RNA-seq
tissue
adipose tissue382
islet of Langerhans282
liver164
bone tissue58
kidney49
primary cell
pancreatic alpha cell52
exocrine cell39
monocyte28
pancreatic beta cell21
osteoblast4
cell line
smooth muscle cell of the coronary artery52
EndoC_BH131
HepG29
early embryonic cell1
in vitro differentiated cells
cardiomyocytes47
adipocyte4
pancreatic endoderm4
definitive endodermal cell2
embryonic stem cell2
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