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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1871ChIP-seq
  • 1527total RNA-seq
  • 531ATAC-seq
  • 369single cell RNA-seq
  • 212DNase-seq
  • 87RNA microarray
  • 84snATAC-seq
  • 75WGBS
  • 57pCHi-C
  • 34Hi-C
  • 21RRBS
  • 18small RNA-seq
  • 10MeRIP-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 1527Transcription
Date released
  • 545February, 2021
  • 190May, 2020
  • 182May, 2021
  • 120July, 2018
  • 93February, 2023
  • 89August, 2017
  • 74August, 2021
  • 44July, 2019
  • 30October, 2019
  • 26May, 2022
  • 26September, 2018
  • 25February, 2020
  • 20November, 2019
  • 16September, 2020
  • 15February, 2018
  • 15March, 2020
  • 5December, 2019
  • 5January, 2019
  • 4November, 2020
  • 2October, 2018
  • 1May, 2023
Available data
  • 1315tsv
  • 1282bam
  • 1278bigWig
  • 237fastq
  • 59txt
  • 2bed bed3+
Organism
  • 1527Homo sapiens
Biosample type
  • 1031tissue
  • 247primary cell
  • 136in vitro differentiated cells
  • 113cell line
Organ
  • 474connective tissue
  • 398adipose tissue
  • 397pancreas
  • 189liver
  • 131epithelium
  • 72heart
  • 62bone element
  • 61blood vessel
  • 61vasculature
  • 60kidney
  • 56artery
  • 19eye
  • 17brain
  • 14embryo
  • 7limb
  • 6musculature of body
  • 5nerve
  • 4skeleton
  • 1pericardium
  • 1spinal cord
Project
  • 1330AMP
  • 105T1D
  • 92HPAP
Genome assembly (visualization)
  • 1279hg19
  • 1277GRCh38
Lab
  • 1241AMP-T2D consortium
  • 115Kyle Gaulton, UCSD
  • 92Klaus Kaestner, Upenn
  • 49Katalin Susztak, Upenn
  • 20Karen Mohlke, UNC
  • 10Bing Ren, UCSD
Audit category:
  • 130inconsistent ontology term
BIOSAMPLE
ASSAY

1527 results

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Clear Filters
total RNA-seq
tissue
adipose tissue382
islet of Langerhans292
liver167
bone tissue58
kidney49
primary cell
monocyte54
pancreatic alpha cell52
exocrine cell39
pancreatic beta cell21
hepatocyte5
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)19
induced pluripotent stem cell9
embryonic stem cell7
neural progenitor cell7
cell line
smooth muscle cell of the coronary artery52
EndoC_BH133
HepG214
H1-hESC8
early embryonic cell2
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