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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
47
ChIP-seq
3
Hi-C
2
ATAC-seq
2
RRBS
1
FAIRE-seq
Assay category
47
DNA binding
3
3D chromatin structure
3
DNA accessibility
2
DNA methylation
Target of assay
28
control
19
histone
19
histone modification
10
narrow histone mark
9
broad histone mark
Date released
28
November, 2017
9
October, 2017
8
October, 2019
6
July, 2019
3
May, 2019
1
February, 2023
Available data
36
tagAlign
28
bam
tsv
8
bigWig
6
fastq
3
bed bed3+
3
hdf5
2
bed bedMethyl
2
bed narrowPeak
2
bigBed bedMethyl
1
bed bed3
1
bed broadPeak
1
bigBed narrowPeak
Organism
55
Homo sapiens
Biosample type
48
tissue
7
primary cell
Organ
300
pancreas
248
liver
220
epithelium
137
kidney
114
connective tissue
93
bone element
64
adipose tissue
55
brain
50
eye
40
musculature of body
35
vasculature
33
blood vessel
29
heart
23
limb
19
lung
15
blood
15
bodily fluid
11
nerve
10
vein
9
artery
8
embryo
8
skeleton
8
spleen
4
gonad
4
ovary
1
bone marrow
1
lymph node
pericardium
1
pituitary gland
1
skin of body
1
thymus
Project
55
AMP
Genome assembly (visualization)
GRCh38
152
hg19
Lab
55
AMP-T2D consortium
Audit category:
1
missing controlled_by
assembly!
GRCh38
files.file_type!
tsv
organ_slims!
pericardium
BIOSAMPLE
ASSAY
55 results
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ChIP-seq
Hi-C
ATAC-seq
RRBS
FAIRE-seq
tissue
brain
9
1
1
cingulate gyrus
8
layer of hippocampus
6
substantia nigra
4
caudate nucleus
3
+ See 12 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
brain pericyte
1
See all biosamples
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