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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
Hi-C
Assay category
6
3D chromatin structure
Date released
3
October, 2022
2
August, 2021
1
March, 2019
Available data
184
fastq
153
zippedFastqFolder
86
bed narrowPeak
79
bigWig
66
txt
25
bam
16
tsv
6
hic
5
bedpe bed3+
bed bed3+
3
bed bedgraph
3
cool
1
bed broadPeak
1
bedpe
1
vcf
Organism
6
Homo sapiens
Biosample type
3
primary cell
2
tissue
1
cell line
Organ
4
pancreas
3
epithelium
1
kidney
1
liver
Project
3
AMP
3
HPAP
Genome assembly (visualization)
6
hg19
GRCh38
Lab
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
Audit category:
3
audit script error
assembly!
GRCh38
files.file_type!
bed bed3+
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
6 results
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Hi-C
primary cell
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
tissue
islet of Langerhans
1
kidney
1
cell line
HepG2
1
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