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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
total RNA-seq
28
ChIP-seq
2
STARR-seq
2
pCHi-C
1
WGBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
31
Transcription
28
DNA binding
1
DNA methylation
1
DNA sequencing
Target of assay
28
control
Date released
August, 2017
24
May, 2020
20
May, 2022
17
August, 2021
1
February, 2020
1
February, 2021
1
July, 2019
1
March, 2020
Available data
84
bam
fastq
24
tagAlign
12
tsv
1
csv
1
vcf
Organism
65
Homo sapiens
Biosample type
47
tissue
17
cell line
1
primary cell
Organ
164
pancreas
143
kidney
123
epithelium
121
heart
89
bone element
65
liver
55
brain
34
blood vessel
34
vasculature
27
eye
25
limb
20
lung
14
connective tissue
13
artery
12
nerve
11
musculature of body
8
blood
8
bodily fluid
5
gonad
5
ovary
5
vein
4
adipose tissue
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
65
AMP
Genome assembly (visualization)
hg19
GRCh38
Lab
29
AMP-T2D consortium
20
Karen Mohlke, UNC
16
Bing Ren, UCSD
assembly!
GRCh38
hg19
files.file_type!
fastq
month_released!
August, 2017
BIOSAMPLE
ASSAY
65 results
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Clear Filters
total RNA-seq
ChIP-seq
STARR-seq
pCHi-C
WGBS
single cell RNA-seq
whole genome sequencing assay
tissue
liver
20
23
1
1
right lobe of liver
1
1
cell line
HepG2
9
4
2
1
1
primary cell
hepatocyte
1
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