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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
single cell RNA-seq
49
total RNA-seq
7
ChIP-seq
6
snATAC-seq
3
snDrop-seq
2
RNA microarray
2
STARR-seq
2
pCHi-C
Assay category
113
Transcription
7
DNA binding
6
DNA accessibility
Target of assay
6
control
1
RNA binding protein
1
transcription factor
Date released
65
August, 2021
47
September, 2023
8
February, 2021
October, 2019
5
April, 2019
3
December, 2019
3
May, 2023
2
March, 2020
1
June, 2019
1
May, 2019
Available data
62
txt
12
tsv
7
bam
5
csv
Organism
135
Homo sapiens
Biosample type
129
tissue
4
cell line
2
primary cell
Organ
262
pancreas
189
epithelium
161
liver
135
kidney
121
heart
91
connective tissue
89
bone element
63
adipose tissue
50
brain
24
blood vessel
24
vasculature
22
musculature of body
20
lung
14
blood
14
bodily fluid
9
spleen
8
artery
8
embryo
8
limb
6
eye
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
88
AMP
47
KPMP
Genome assembly (visualization)
GRCh38
hg19
Lab
66
Katalin Susztak, Upenn
47
KPMP
20
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
7
audit script error
4
inconsistent ontology term
assembly!
GRCh38
hg19
month_released!
October, 2019
BIOSAMPLE
ASSAY
135 results
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single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
snDrop-seq
RNA microarray
STARR-seq
pCHi-C
tissue
kidney
64
49
5
6
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
kidney interstitium
1
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cell line
HEK293T
2
RCC 7860 VHL
1
RCC 7860 vector
1
primary cell
epithelial cell of proximal tubule
1
kidney epithelial cell
1
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