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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
4
ATAC-seq
4
Hi-C
2
Capture-C
2
pCHi-C
2
total RNA-seq
Assay category
4
3D chromatin structure
4
DNA accessibility
2
Transcription
Date released
4
February, 2023
4
July, 2019
2
August, 2021
2
February, 2021
2
May, 2021
Available data
430
bam
378
fastq
237
bigWig
186
tsv
156
bed narrowPeak
155
txt
153
zippedFastqFolder
152
tagAlign
42
bigBed narrowPeak
40
bed broadPeak
20
bedpe bed3+
18
bed bedMethyl
18
bigBed bedMethyl
18
bigBed broadPeak
18
hic
14
bed bed3+
10
bed bed3
7
bed bedgraph
4
hdf5
4
tar
3
csv
2
ibed
1
bedpe
1
vcf
Organism
14
Homo sapiens
Biosample type
7
primary cell
6
in vitro differentiated cells
1
cell line
Organ
8
connective tissue
3
brain
2
blood vessel
2
epithelium
2
liver
2
vasculature
Project
14
AMP
Genome assembly (visualization)
GRCh38
245
hg19
Lab
10
AMP-T2D consortium
2
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
audit script error
assembly!
GRCh38
audit.ERROR.category!
audit script error
audit.WARNING.category!
inconsistent control run_type
organ_slims!
eye
BIOSAMPLE
ASSAY
14 results
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ATAC-seq
Hi-C
Capture-C
pCHi-C
total RNA-seq
primary cell
CD8-positive, alpha-beta T cell
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
+ See 1 more…
in vitro differentiated cells
adipocyte
1
1
immature adipocyte
2
osteoblast
1
preadipocyte
1
cell line
HepG2
1
See all biosamples
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