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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
single cell RNA-seq
49
total RNA-seq
10
ChIP-seq
6
snATAC-seq
4
RRBS
3
snDrop-seq
2
DNase-seq
1
FAIRE-seq
1
Hi-C
Assay category
108
Transcription
10
DNA binding
9
DNA accessibility
4
DNA methylation
1
3D chromatin structure
Target of assay
9
control
1
RNA binding protein
1
transcription factor
Date released
64
August, 2021
47
September, 2023
5
April, 2019
5
July, 2019
5
October, 2019
3
February, 2021
3
May, 2023
1
December, 2019
1
June, 2019
1
May, 2019
Available data
57
txt
11
bam
4
bed bedMethyl
4
bigBed bedMethyl
3
tsv
1
bed narrowPeak
1
bigBed narrowPeak
1
bigWig
1
hic
Organism
135
Homo sapiens
Biosample type
127
tissue
8
primary cell
cell line
Organ
270
pancreas
195
epithelium
135
kidney
127
liver
125
heart
118
connective tissue
93
bone element
69
brain
67
adipose tissue
55
eye
42
musculature of body
42
vasculature
40
blood vessel
26
limb
20
lung
12
nerve
11
artery
9
spleen
9
vein
8
blood
8
bodily fluid
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
88
AMP
47
KPMP
Genome assembly (visualization)
GRCh38
117
hg19
Lab
67
Katalin Susztak, Upenn
47
KPMP
21
AMP-T2D consortium
Audit category:
audit script error
3
inconsistent ontology term
assembly!
GRCh38
audit.ERROR.category!
audit script error
biosample_type!
cell line
BIOSAMPLE
ASSAY
135 results
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single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
RRBS
snDrop-seq
DNase-seq
FAIRE-seq
Hi-C
tissue
kidney
59
49
7
6
1
1
1
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
primary cell
epithelial cell of proximal tubule
2
1
kidney epithelial cell
1
1
kidney glomerular epithelial cell
1
kidney tubule cell
1
renal cortical epithelial cell
1
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