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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
4
Hi-C
Assay category
4
3D chromatin structure
Date released
4
July, 2019
Available data
401
bam
351
fastq
222
bigWig
189
tsv
181
bed narrowPeak
153
zippedFastqFolder
152
txt
130
tagAlign
42
bigBed narrowPeak
40
bed broadPeak
19
bed bedMethyl
19
bigBed bedMethyl
18
bigBed broadPeak
14
hic
13
bedpe bed3+
8
bed bed3+
5
bed bed3
4
hdf5
4
tar
3
csv
1
bedpe
1
vcf
Organism
4
Homo sapiens
Biosample type
4
primary cell
Organ
3
brain
2
blood vessel
2
epithelium
2
vasculature
1
connective tissue
1
liver
Project
4
AMP
Genome assembly (visualization)
5
hg19
GRCh38
Lab
4
AMP-T2D consortium
assembly!
GRCh38
audit.ERROR.category!
audit script error
biosample_type!
in vitro differentiated cells
organ_slims!
bodily fluid
BIOSAMPLE
ASSAY
4 results
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Hi-C
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
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